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kegg pathway 04016  (PathView Systems Ltd)
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PathView Systems Ltd kegg pathway 04016
Differentially expressed genes (DEGs) in the “plant-pathogen interaction” <t>KEGG</t> pathway 04626 for ( A ) pecan ( Carya illinoinensis ) trees resistant to Venturia effusa (R) as opposed to susceptible non-diseased trees (S-ND) and ( B ) susceptible diseased leaves (S-D) compared to susceptible non-diseased (S-ND) leaves . Significant DEGs have a Benjamini & Hochberg adjusted p -value < 0.05 and an absolute log2 fold change > 1.5. Genes in the figure with no expression information are not differentially expressed to a significant extent or C. illinoinensis DEGs have no Arabidopsis thaliana ortholog information. Pathway element in the figure shows expression pattern for each individual in the case group (R or S-D) compared to S-ND
Kegg Pathway 04016, supplied by PathView Systems Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Differentially expressed genes (DEGs) in the “plant-pathogen interaction” KEGG pathway 04626 for ( A ) pecan ( Carya illinoinensis ) trees resistant to Venturia effusa (R) as opposed to susceptible non-diseased trees (S-ND) and ( B ) susceptible diseased leaves (S-D) compared to susceptible non-diseased (S-ND) leaves . Significant DEGs have a Benjamini & Hochberg adjusted p -value < 0.05 and an absolute log2 fold change > 1.5. Genes in the figure with no expression information are not differentially expressed to a significant extent or C. illinoinensis DEGs have no Arabidopsis thaliana ortholog information. Pathway element in the figure shows expression pattern for each individual in the case group (R or S-D) compared to S-ND

Journal: BMC Genomics

Article Title: Transcriptome profile of pecan scab resistant and susceptible trees from a pecan provenance collection

doi: 10.1186/s12864-024-10010-0

Figure Lengend Snippet: Differentially expressed genes (DEGs) in the “plant-pathogen interaction” KEGG pathway 04626 for ( A ) pecan ( Carya illinoinensis ) trees resistant to Venturia effusa (R) as opposed to susceptible non-diseased trees (S-ND) and ( B ) susceptible diseased leaves (S-D) compared to susceptible non-diseased (S-ND) leaves . Significant DEGs have a Benjamini & Hochberg adjusted p -value < 0.05 and an absolute log2 fold change > 1.5. Genes in the figure with no expression information are not differentially expressed to a significant extent or C. illinoinensis DEGs have no Arabidopsis thaliana ortholog information. Pathway element in the figure shows expression pattern for each individual in the case group (R or S-D) compared to S-ND

Article Snippet: Kegg pathway (04016) analysis via Pathview for differentially expressed genes (DEG; absolute log 2 fold change > 1.5, Benjamini & Hochberg adjusted p -value less than 0.05) in susceptible-diseased samples (S-D), compared to susceptible non-diseased samples (S-ND).

Techniques: Expressing